FastQCFastQC Report
Wed 31 May 2023
EGAF00007931432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435059
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33450.7688612349129659No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23280.5350998370335978No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17480.40178458553897284No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13070.3004190236266805No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12250.2815710053119232No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10750.24709292302883054No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9860.2266359275408623No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9450.21721191838348364No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7450.17124114200602678No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6750.15515137027391687No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6670.1533125392188186No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5560.12779875832933005No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5310.12205241128214793No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4660.10711190895947445No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4550.10458351625871433No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4530.10412380849493977No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)