FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007931434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417756
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62001.4841199168892847No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32250.7719817309625714No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16660.39879738411895943No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12200.29203649977498825No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11900.2848552743706853No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9590.22955983875755226No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9410.22525110351497046No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8410.20131368550062714No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6530.15631133963366176No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6170.14769386914849816No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5960.14266701136548607No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5610.13428891506046592No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4870.11657522572985188No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4620.11059087122626605No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4340.10388839418224993No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4260.10197340074110248No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4180.100058407299955No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)