FastQCFastQC Report
Wed 31 May 2023
EGAF00007931436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422406
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG71271.6872392911085543No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21060.4985724634593259No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9040.21401211157038488No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8870.2099875475253666No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8210.19436276946823672No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6900.16334995241544864No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6410.15174973840333705No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4970.11765931355141736No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4900.1160021401211157No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4760.11268779326051241No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4700.11126735889168242No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4610.10913670733843743No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4550.10771627296960744No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4410.10440192610900413No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4290.10156105737134417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)