FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462533
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA22900.4950998090947024No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16930.36602793746608353No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10900.23565886109747844No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10370.22420021922760106No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8560.18506787623801976No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8300.1794466556980799No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7160.15479976563834366No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6200.13404448979856573No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5820.12582885977865363No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5670.12258584792868832No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5550.1199914384487161No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5260.11372161553878318No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5230.11307301316879012No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5050.10918139894883175No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4900.10593838709886645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)