FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409561
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18320.44730821538183574No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12110.2956824502332986No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11230.27419602940709686No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10730.2619878357558459No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6910.16871723626028845No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6320.15431156775181232No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6210.1516257651485371No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5850.14283586571963638No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5630.13746426051308597No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5490.13404596629073567No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5200.1269652139730101No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5050.12330275587763484No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4890.11939613390923452No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4690.11451285644873413No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG4120.10059551568630802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)