FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409946
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14080.3434598703243842No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12660.30882116181155567No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12330.3007713211008279No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10750.2622296595161314No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG10680.2605221175471891No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10450.2549116225063789No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8820.21515028808672365No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8280.2019778214691691No Hit
ACGGCGCGGACGTTTACGACCGGCAGAGAAGATATCAGTGGTGG7380.1800237104399116No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6570.16026501051357986No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6400.1561181228747201No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5300.12928532050562755No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4870.1187961341249823No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4860.11855219955799055No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4790.11684465758904831No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4430.1080630131773453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)