FastQCFastQC Report
Wed 31 May 2023
EGAF00007931442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409946
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58591.429212628004664No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31070.7579046996433677No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15860.3868802232489157No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10650.25979031384621387No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10600.2585706410112551No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA10220.24930112746556865No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9510.23198177320915436No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9380.22881062383826165No Hit
CGCTCCCTGCAGATCGTCGACCCAAAATACA8010.19539158816039184No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7130.17392534626511785No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6250.15245910436984383No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5840.14245778712318208No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5640.13757909578334707No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5480.13367614271147907No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5390.13148073160855334No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5000.12196728349587506No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4470.1090387514453123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)