FastQCFastQC Report
Sun 21 May 2023
EGAF00007931444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433165
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30930.7140466104140455No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24400.5632957418073945No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24160.5577551279535512No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22740.5249731626516455No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22250.5136610760333822No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15030.34698094259693185No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13680.31581498966906374No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12800.2954994055383053No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11830.2731060912123556No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11720.27056664319601076No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10610.24494130412198584No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10530.24309443283737145No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9910.22878118038160977No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9370.21631479921046254No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8770.20246326457585445No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7760.17914651460759756No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7700.17776136114413676No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7010.16183209631433748No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6630.15305945771241905No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6610.15259773989126546No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6500.15005829187492065No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6250.14428681911050062No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5950.1373610517931966No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5420.12512552953262615No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5330.12304779933743494No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5090.11750718548359171No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4720.10896540579225006No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4400.10157792065379244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)