FastQCFastQC Report
Wed 31 May 2023
EGAF00007931446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415742
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58871.416022436992173No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30000.721601377777564No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23050.5544303919257617No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22540.5421631685035431No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21060.50656416719985No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13560.3261638227554589No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13060.31413713312583286No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11990.28840001731843307No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11450.27541119251843693No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11040.2655493070221436No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9550.22970977192585787No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9520.2289881705480803No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9070.21816414988141686No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8420.20252945336290293No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7320.17607073617772562No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6890.1657277830962472No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6890.1657277830962472No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6650.15995497207402667No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6560.15779016794069398No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6190.1488904176147707No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6120.14720668106662305No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5560.13373678868144184No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5540.13325572109625683No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5510.13253411971847925No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4970.1195452949184831No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4800.11545622044441023No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4590.11040501079996728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)