FastQCFastQC Report
Wed 31 May 2023
EGAF00007931447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412078
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC30790.7471886390440645No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA27130.6583705026718243No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC24060.5838700440207922No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22430.5443144259096578No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA21400.5193191580234809No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA19330.46908594974737794No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT17540.425647571576255No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15140.36740617067642534No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14770.3584272880377016No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11730.2846548468979174No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11650.2827134668679231No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11420.27713199928168936No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC10370.2516513863880139No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10000.24267250374929017No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9540.23150956857682284No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA9300.22568542848683987No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8940.21694921835186542No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7770.18855653541319847No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7050.17108411514324956No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6870.16671601007576237No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6670.16186256000077656No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6460.15676643742204144No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6430.1560384199107936No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT6380.15482505739204713No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6280.15239833235455424No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6210.1506996248283092No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6180.14997160731706133No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6130.14875824479831487No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5980.14511815724207552No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5960.14463281223457697No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5930.1439047947233291No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5850.14196341469333476No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5800.1407500521745883No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5720.138808672144594No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5580.13541125709210391No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5580.13541125709210391No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5470.13274185955086173No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5410.13128582452836599No Hit
CGGCACCTGCGGTTTGCGGGTACCGCTGAAGCGTGGGTGATGCT5220.12667504695712947No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4970.12060823436339722No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4930.11963754434840006No Hit
TTCCTGGTGATACTCAAAGTAATCAGCTTCACCCACCGGATGGA4650.11284271424341993No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4540.11017331670217774No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG4500.10920262668718057No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4440.10774659166468484No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4400.10677590164968767No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4390.1065332291459384No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4360.10580521163469053No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG4290.10410650410844549No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT4170.10119443406345399No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT4140.10046641655220613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)