FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences382102
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG22910.5995781231189578No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20500.5365059591417998No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG20050.5247289990630775No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19060.49881968688988804No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18070.4729103747166986No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17540.4590397328462034No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17320.45328210791882795No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16230.4247556935059225No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15800.41350215387514333No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12660.33132514354805787No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12530.3279229106364269No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12090.3164076607816761No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG12090.3164076607816761No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT11060.2894515077126003No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10260.26851468979487153No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9910.2593548319558652No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9870.25830799105997876No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT9810.25673772971614905No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG9310.2436522185175686No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9080.23763288336622157No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9010.2358009117984203No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8630.22585592328749918No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8370.2190514574642373No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8200.2146023836567199No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8090.21172357119303223No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8050.21067673029714581No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7770.2033488440259407No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7740.2025637133540259No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7370.19288043506707633No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7150.18712281013970092No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7140.1868610999157293No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7050.1845057078999848No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6860.17953321364452424No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6530.1708967762534611No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6370.16670941266991535No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6300.16487744110211408No Hit
TTTAGTGCCGTTGACTGCAATTTCAACACGGCGGTCCGGCGCCA6270.16409231043019926No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5990.1567644241589942No Hit
TTCGGACGGTTTTTTGGCAGCACCGGTGCCACCGGTTTCACGAA5680.1486514072158743No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5560.14551088452821498No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC5490.1436789129604137No Hit
GTAAGCCAGTACCGCGCGACGGTTTTTGGAGTATGCCGCTTCGT5420.14184694139261245No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5300.13870641870495315No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5210.13635102668920865No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5210.13635102668920865No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5210.13635102668920865No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5080.13294879377757773No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4980.13033169153786162No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4750.12431235638651461No Hit
GATGTCACCCAGTTCGGTCAGCACATCTTTTTCCGGGTTTTCGT4680.12248038481871334No Hit
GTCCAGGTGCATGGTGTCACGGATTTTCTGGTACACGGCAGAAG4670.12221867459474173No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4640.1214335439228269No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4580.11986328257899723No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT4570.11960157235502564No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4530.1185547314591392No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4530.1185547314591392No Hit
AGATTCCGCCTTCAGACGACCACGGGTCATAACGCCCGCCGTGC4500.11776960078722434No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC4490.11750789056325275No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4240.11096513496396251No Hit
GTATGCCAGTACCGCACGACGGTTTTTGGAGTAGGCAGCTTCAT4220.11044171451601928No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4200.10991829406807607No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4200.10991829406807607No Hit
CTGGTCTGCTTTGGAACGGGTCACCATCGGGTGGGTAGATTTAC4190.10965658384410445No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4180.10939487362013284No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4060.10625435093247354No Hit
CTGCACGGTAGCTACCATCGGGACCAGGTTGCGGGCCAGAATGC3970.10389895891672904No Hit
GTTCAGTACATAGCAGCTGCTAGCCCACAGCAGCTGGGATTTGG3910.10232869757289939No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC3890.10180527712495616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)