FastQCFastQC Report
Wed 31 May 2023
EGAF00007931455

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931455
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences377028
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG33220.8811016688415715No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT30610.8118760410367399No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24370.6463710918022004No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23200.6153389138207243No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA22020.584041503548808No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21910.5811239483539684No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20920.5548659516004116No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT16780.4450597833582651No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16220.43020677509362704No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15540.4121709793437092No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15490.41084481789150934No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT14960.39678750649819117No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12450.3302142015977593No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12260.3251747880793999No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11620.30819992149124203No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11480.3044866694250825No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT11210.29732539758320337No Hit
CGCGAAGGTGTCCACCGGTTCAACTTCGCTCGGTGGCGGGGTCA11200.2970601652927634No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11150.2957340038405636No Hit
CAGACCCACGGATTCTTCGCTGGACAGGTGTTCACGGATGCGTT10960.2906945903222042No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10620.2816766924472453No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10490.27822867267152573No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10030.26602798731128724No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9800.25992764463116796No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9770.25913194775984805No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9700.2572753217267683No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9240.24507463636652982No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG7490.1986589855395355No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7490.1986589855395355No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT7210.19123248140721644No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7080.18778446163149687No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7030.18645830017929702No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7020.18619306788885706No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6940.18407120956533732No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6520.1729314533668587No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT6440.17080959504333895No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6370.1689529690102592No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6260.16603541381541956No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5470.14508206287066214No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5460.14481683058022216No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5130.13606416499570323No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4980.13208568063910373No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4930.13075951918690387No Hit
CTGGCCGTCGATGTTACGGACCGGAATCAGCAGTGCACCATCAA4800.1273114994111843No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4510.11961976298842526No Hit
CCAGTTACCATCTTCGGTGGTGCGTTCGACGTGGCAACGTGCCA4220.11192802656566621No Hit
CATGTGGTCACGCTGCATCAGACCGGCGTCCGGTTTCGGCAGAG4070.1079495422090667No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4030.10688861304730683No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT3810.10105350265762755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)