FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419924
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT39800.9477905525761804No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC39690.9451710309484573No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA31070.7398957906668825No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA24780.5901067812270792No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA24730.5889160895781141No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT23830.5674836398967432No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT20790.49508958763966815No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC20150.4798487345329155No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT18810.4479381983406521No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA17020.4053114373077033No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC16370.3898324458711576No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16000.38102132766881625No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15750.375067869423991No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT15550.3703051028281308No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA14100.3357750450081443No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13490.3212486068907707No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG12560.2991017422200208No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC12410.29552966727312563No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT12310.2931482839751955No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC12030.28648041074099123No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG11970.28505158076223314No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA11830.281717644145131No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC11370.2707632809746526No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9550.2274221049523247No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9400.22385003000542958No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9130.2174202951010183No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8660.2062277936007468No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT8240.19622598374944036No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA8130.19360646212171728No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7690.18312837561082482No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG7470.1778893323553786No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6980.1662205541955211No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6960.16574427753593507No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT6910.16455358588697003No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6820.16241034091883294No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6800.16193406425924692No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG6570.15645688267400767No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6440.15336108438669854No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6300.15002714776959641No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6140.14621693449290823No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6120.14574065783332224No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6110.14550251950352922No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC6080.1447881045141502No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6020.14335927453539213No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6020.14335927453539213No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5920.14097789123746202No Hit
CAGCAGAAATTCCTCTTCACCGGATTCCATCGGCGCGTGCTTGC5520.1314523580457416No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5480.13049980472656955No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT5330.12692772977967443No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5280.12573703813070936No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5220.12430820815195132No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5130.12216496318381422No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5080.12097427153484916No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT4910.11692591992836798No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC4820.11478267496023091No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCACGGC4800.11430639830064487No Hit
GCGGCTCGGACCCGGCGGAGAGTGGGAAGAGCTGCAAGAGGTGA4760.11335384498147283No Hit
TTCCTGGTGATACTCAAAGTAATCAGCTTCACCCACCGGATGGA4750.11311570665167982No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4720.1124012916623008No Hit
GTCAACTACGTTGCCCCATTTGTCCACGGTAGAGCTCGGTTCCA4650.11073432335374973No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC4620.1100199083643707No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4530.10787666339623361No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC4510.10740038673664758No Hit
CCCATGACGGATTCCTGTCACCGAAGGATGCGTACTCCTGGCGA4340.10335203513016641No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4340.10335203513016641No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG4290.10216134348120136No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4260.10144692849182234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)