FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences561686
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9390.16717525450162546No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9240.1645047232795548No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6990.12444675494849436No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6650.1183935508451341No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6480.115366948793454No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6340.11287445298618802No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5840.10397268224595235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)