FastQCFastQC Report
Sun 21 May 2023
EGAF00007931461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544869
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9160.16811380350139207No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9120.16737968208872225No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6720.12333239732853218No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6380.1170923653208386No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6070.11140292437264737No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5760.10571348342445616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)