FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544869
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50800.9323341940906896No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11680.21436345249959163No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9040.1659114392633826No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6890.12645241333237897No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6670.12241474556269488No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6580.12076297238418775No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6030.11066880295997752No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6010.11030174225364262No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5600.10277699777377682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)