FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562090
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17180.3056450034691953No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15590.2773577185148286No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13330.23715063424006833No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10540.18751445498051914No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10410.1852016580974577No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8960.1594050774786956No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG8880.15798181785835008No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8720.1551352986176591No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8480.1508655197566226No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8360.14873063032610434No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7900.14054688750911776No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7350.13076197761924246No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6770.12044334537173762No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6330.11261541745983739No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6290.11190378764966463No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6130.10905726840897366No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5660.10069561813944386No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)