FastQCFastQC Report
Wed 31 May 2023
EGAF00007931464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562090
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49470.8801081677311463No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22880.4070522514188119No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18820.334821825686278No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15260.2714867725809034No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14570.2592111583554235No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11860.21099823871621984No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11730.20868544183315837No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10900.1939191232720739No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG8750.15566902097528867No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8710.15495739116511592No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8690.15460157626002954No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8470.15068761230407943No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8220.14623992599049973No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8180.14552829618032698No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8130.14463875891761105No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7820.13912362788877225No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7090.1261363838531196No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6930.1232898646124286No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5990.10656656407336904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)