FastQCFastQC Report
Wed 31 May 2023
EGAF00007931465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences584171
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17790.30453411757858573No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16570.2836498217131628No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13860.23725929565144452No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11830.20250919679340468No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10930.18710274902383034No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9380.16056942230956345No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG9240.15817286376762968No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9120.15611867073168645No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8810.15081200538883305No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8780.15029845712984724No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8740.14961372611786616No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7310.12513459243954253No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7140.12222448563862294No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6580.11263825147088781No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6460.11058405843494457No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6330.10835868264600604No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6020.10305201730315267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)