FastQCFastQC Report
Wed 31 May 2023
EGAF00007931468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences568068
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16950.298379771435814No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11540.20314469394509108No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10090.17761958075441672No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8810.1550870670412697No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7200.12674538963645196No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6470.11389481540942281No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5740.10104424118239366No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)