FastQCFastQC Report
Wed 31 May 2023
EGAF00007931469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences571854
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8840.1545849115333634No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8490.14846446820342254No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8150.14251889468290857No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6900.12066016850454837No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6530.11418998555575374No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5940.10387266679956772No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)