FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences571854
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17540.30672164573475047No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11520.2014500204597677No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10750.1879850451338978No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8330.14566655125259245No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7090.12398269488365912No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6900.12066016850454837No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)