FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552635
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8470.15326571787888932No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7880.14258959349299266No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7490.1355324943226542No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7020.12702778506609244No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6110.11056122033530269No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5880.10639934133741077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)