FastQCFastQC Report
Wed 31 May 2023
EGAF00007931474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547765
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG25230.46059897948937956No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20270.3700491999306272No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16720.3052403859319234No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16360.2986682245123365No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11890.21706388688579958No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10720.19570436227214225No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9930.18128211915693773No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9820.1792739587231751No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9530.173979717579619No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG8860.1617481949376101No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8780.16028771462214636No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG8110.14805619198013747No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7720.1409363504422517No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7410.13527698921982967No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7330.13381650890436592No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA7280.13290370870720108No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6970.12724434748477906No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6780.12377570673555265No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6060.11063138389637892No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5700.10405922247679206No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5620.1025987421613283No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5610.10241618212189534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)