FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532185
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49490.9299397765814519No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG25170.47295583302798844No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19500.36641393500380504No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15520.29162791134661814No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14780.2777229722746789No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12120.2277403534485188No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10050.18884410496349954No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9660.18151582626342344No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9420.17700611629414584No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8670.16291327264015332No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG8370.15727613517855635No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG8040.1510752839707996No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7520.1413042457040315No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7080.13303644409368923No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6720.12627187913977284No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA6680.1255202608115599No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6660.12514445164745341No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6430.12082264626022907No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5720.1074814209344495No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5540.10409913845749129No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5480.10297171096517188No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5380.10109266514463956No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5360.1007168559805331No Hit

[OK]Adapter Content

Adapter graph