FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569130
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22720.39920580535202854No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16420.2885105336214925No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15090.2651415318117126No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13420.2357984994640943No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11710.2057526399943774No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11140.19573735350447174No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10200.17922091613515367No Hit
CGCTCCCTGCAGATCGTCGACCCAAAATACA10060.1767610212078084No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG9830.1727197652557412No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9640.1693813364257727No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9260.16270447876583558No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8990.15796039569166972No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8840.15532479398379984No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8680.15251348549540528No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8330.14636374817704215No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8320.14618804139651748No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7490.13160437861297067No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7450.13090155149087201No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7140.12545464129460757No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6920.12158909212306503No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6800.11948061075676909No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6760.11877778363467047No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6700.1177235429515225No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6230.10946532426686346No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6210.10911391070581412No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6110.10735684290056755No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6100.10718113612004287No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5900.10366700050954966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)