FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences553264
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51290.9270438705572747No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21680.39185632898580064No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15190.2745524740449406No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14460.2613580496833338No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11550.20876109777610688No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11400.2060499146881055No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10600.1915902715520981No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9190.16610515052488506No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9160.16556291390728478No Hit
CGCTCCCTGCAGATCGTCGACCCAAAATACA9150.16538216836808467No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8610.1556219092512797No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8430.152368489545678No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8240.14893432430087625No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8180.14784985106567572No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7920.1431504670464733No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7910.1429697215072732No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7730.13971630180167155No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7690.13899331964487116No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7000.12652187744006477No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6840.1236299488128633No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6740.12182249342086238No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6690.1209187657248619No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6450.1165808727840597No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6390.11549639954885912No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6130.11079701552965673No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5760.1041094305792533No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5730.10356719396165304No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5650.10212122964805229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)