FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences553021
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA62421.1287093980156269No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48180.8712146555013283No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA31740.5739384218682473No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA31400.5677903732407992No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17380.3142737798383787No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG14520.26255784138396193No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14010.2533357684427897No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC12390.22404212498259563No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11800.21337345236437677No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10710.19366353176461654No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA10500.18986620761236916No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9810.17738928539784204No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9770.17666598555931873No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9750.17630433564005707No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9710.17558103580153375No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG9580.17323031132633301No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8930.16147668895032918No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8770.15858348959623597No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8000.14465996770466222No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7940.14357501794687724No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7910.14303254306798477No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7540.13634201956164413No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC7040.12730077158010275No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT6930.12531169702416364No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6880.1244075722260095No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6690.12097189799302377No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6560.118621173517823No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6490.11735539880040721No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC6370.11518549928483729No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5960.10777167593997335No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5850.10578260138403425No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5830.1054209514647726No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5750.10397435178772596No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5670.10252775211067934No Hit
ATGGCTGAGTCCGACAAGCAGGCAGAACGCG5620.10162362731252521No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)