FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences578412
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA32860.5681071623686922No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG20440.3533813268051147No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15260.26382578508053084No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12860.22233286999578153No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12830.22181420855722217No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10200.17634488911018445No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10080.17427024335594696No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8810.15231357579026716No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6790.11739037226060317No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6390.11047488641314496No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5870.10148475481144928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)