FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557535
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14830.2659922695436161No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11910.21361887594500795No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11310.20285721972611587No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10650.19101939788533456No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9330.16734375420377195No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8420.1510219089384523No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6540.11730205278592376No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6530.11712269184894221No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)