FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502282
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9200.18316403932452288No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7990.15907398632640626No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6640.13219665446900347No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6040.12025117364349111No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5420.107907510123795No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5360.10671296204124375No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)