FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501798
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT24070.4796750883821777No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20720.4129151570950861No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13570.27042754255696516No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11850.23615080171702557No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11440.22798018326099348No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10310.2054611616626611No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10050.20027979386127484No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8760.17457223823132018No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8610.17158298757667428No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8450.168394453545052No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7820.15583960079553924No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7570.1508575163711294No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7000.13949836388347503No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6770.134914846213018No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6640.13232416231232488No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6400.12754136126489143No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6390.12734207788791505No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6180.12315712697141082No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6020.11996859293978852No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5800.11558435864630788No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA5740.1143886583844495No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5270.10502233966655905No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5260.10482305628958266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)