FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501798
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27960.5571963220259945No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24420.48665000657635143No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15010.29912434884156575No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14000.27899672776695006No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12140.24193001964934097No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10290.20506259490870826No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10070.20067836061522762No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9980.1988848102224401No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9460.18852207461966766No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9050.18035145616363557No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9010.17955432265573No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8960.17855790577084804No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7840.15623816754949202No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7640.15225250000996418No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7360.14667256545462518No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7270.14487901506183765No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7020.1398969306374278No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6850.13650911322882914No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6760.13471556283604158No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6580.13112846205046652No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6560.13072989529651372No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6370.1269435111339623No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6170.1229578435944344No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6080.12116429320164687No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5930.11817504254700098No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5860.11678005890816624No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5450.10860944045213412No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5280.10522162304353545No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5230.10422520615865347No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5140.10243165576586594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)