FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485279
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21930.4519049866159467No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19900.41007338046773095No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13100.26994780322247613No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11170.23017686732786707No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10570.21781284580622692No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10350.21327937124829222No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8670.17866011098769985No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8520.17556910560728983No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8000.16485362028853506No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7980.1644414862378137No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7290.15022286148792757No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7170.14775005718359954No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6680.13765277294092676No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6670.1374467059155661No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6630.13662243781412342No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6400.13188289623082802No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6220.128173689774336No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6090.12549481844464733No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5890.12137347793743393No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5870.1209613438867126No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA5640.11622180230341721No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5390.1110701266694005No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5290.1090094564157938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)