FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485279
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44590.9188528660832221No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26060.5370106680899029No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21810.4494321823116187No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14740.30374279538162585No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13480.2777783501861815No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10930.225231258719211No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10510.21657644365406292No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8960.18463605472315925No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8730.17989651313986388No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8650.17824797693697852No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8600.17721764181017519No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7900.16279295003492836No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7450.15351993389369825No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7310.1506349955386489No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7110.1465136550314355No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6850.14115591237205813No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6750.13909524211845145No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6680.13765277294092676No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6580.13559210268732008No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6530.13456176756051674No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6480.1335314324337134No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6460.13311929838299205No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6200.12776155572361467No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6020.12405234926712262No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5550.11436719907517119No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5530.11395506502444985No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5260.10839125533971179No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5060.10426991483249842No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4930.10159104350280972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)