FastQCFastQC Report
Wed 31 May 2023
EGAF00007931514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497414
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45560.9159372273398015No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16250.3266896388119353No Hit
CGTCGCGGTCAGAAAGCCAAATCTAACCCGA12630.25391323927352266No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10370.20847824950644736No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9490.19078674906617024No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8410.16907445307128469No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8250.16585781662759794No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7820.1572131061851898No Hit
CCGGGTACCTTCGACTTCTCCTCTTTTGGTA6850.13771224774533888No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6820.13710912841214762No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6760.1359028897457651No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6590.13248521352434792No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6260.125850900859244No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5900.11861346886094884No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5820.11700515063910547No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5220.10494276397528014No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)