FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475651
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44080.926729892294981No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43120.9065470271270323No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15250.3206132227200195No Hit
CGTCGCGGTCAGAAAGCCAAATCTAACCCGA11320.2379896184387292No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9060.1904757900225165No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8340.17533864114655492No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7840.16482673220491495No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7570.15915030137642935No Hit
CCGGGTACCTTCGACTTCTCCTCTTTTGGTA6750.14191077071213978No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6680.1404391034603102No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6570.13812648349314938No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6390.134342196274159No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6320.13287052902232938No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5980.1257224309420142No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5460.11479004564270863No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4910.10322694580690464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)