FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510726
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46530.9110560261275127No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21600.4229273622255378No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21270.4164659719693143No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16850.3299225024768663No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15320.29996514765255733No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12530.24533703003175872No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11890.2328058489287798No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10440.20441489174234323No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9780.19149211122989626No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9560.18718451772574726No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8840.17308693898489602No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8390.16427595227186398No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7480.14645817914106585No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6880.13471019685702315No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5960.11669662402149097No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5530.10827723671792704No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5500.1076898376037249No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5450.10671083908005466No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5380.10534024114691636No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)