FastQCFastQC Report
Wed 31 May 2023
EGAF00007931520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537948
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA23000.4275506182753724No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22080.4104485935443575No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18910.3515209648516213No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16540.30746466201194167No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13240.24612044286808388No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12770.23738353892941325No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11150.20726910407697396No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10790.20057700744309856No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10300.19146832035810152No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9980.18551979001687896No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9600.17845591023667715No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9530.1771546692245347No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8230.15298876471331802No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7120.1323548000922022No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6750.12547681188516363No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5950.1106054860321072No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5870.10911835344680156No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5700.10595819670302706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)