FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508866
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16620.32660857671764276No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15570.30597446086002994No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13650.2682435061489665No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11950.23483588999854577No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10570.20771676629996894No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8550.1680206576977043No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8060.15839140363081833No Hit
AACGTTCAGCGCTACGAACTGTGCTTTCGCCATAGCGTCAGAAA7470.14679699567273113No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7410.1456179033380104No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6500.12773500292807932No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6110.12007090275239454No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6030.11849877963943356No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6030.11849877963943356No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5270.1035636100663043No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)