FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508866
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45540.8949310820530356No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36680.7208184472926075No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14050.2761041217137714No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11540.22677875904462078No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10460.20555509701964764No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10130.1990700891786836No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8480.16664504997386345No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7870.15465761123753602No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT7720.1517098804007342No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7140.1403119878317671No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6550.1287175798736799No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6530.12832454909543967No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5990.11771271808295308No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5710.11221028718758966No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5150.10120542539686284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)