FastQCFastQC Report
Sun 21 May 2023
EGAF00007931536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487567
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA45040.9237704766729495No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44840.9196684763324836No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG25530.5236203434604885No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21520.4413752366341447No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18910.387844132191063No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18270.37471773110157164No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16960.3478496288715192No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG15740.3228274267946764No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11130.22827631894693448No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10640.2182264181127927No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8390.1720789142825499No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8130.16674631383994404No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7700.15792701310794208No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7220.14808221229082363No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7150.1466465121716605No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6700.13741701140561194No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6270.12859771067360998No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5370.11013870914151286No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5360.10993360912448956No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5350.10972850910746625No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5250.10767750893723323No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG4970.10193470846058081No Hit

[OK]Adapter Content

Adapter graph