FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490072
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG26190.5344112701807081No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20330.41483700354233666No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19410.3960642517834114No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18520.3779036549731468No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG17070.3483161657878842No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16040.3272988458838701No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15100.30811799082583785No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT11290.23037431234594102No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11290.23037431234594102No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10340.21098940563835517No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9280.18935993078568047No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8730.17813709006023604No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7810.15936433830131083No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7460.1522225305669371No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA7030.1434483096361351No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6340.1293687458169412No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6160.12569581612497754No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5560.11345271715176547No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5550.11324866550221192No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5430.1108000457075695No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5260.1073311676651594No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5250.10712711601560587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)