FastQCFastQC Report
Wed 31 May 2023
EGAF00007931538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490072
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA43590.889461140403859No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43410.8857882107118954No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG25430.5189033448146395No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21480.43830294324099317No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19010.38790218580127No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18350.37443477693073673No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16910.34505133939502763No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG16500.3366852217633327No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11440.23343508708924404No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10990.22425276285933496No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8450.17242364387273706No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8090.1650777844888098No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7570.154467098712026No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7320.14936580747318762No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7010.14304020633702802No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6960.14201994808926036No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6230.1271241776718523No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5680.11590133694640786No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5580.11386082045087252No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5220.10651496106694526No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5210.10631090941739174No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5100.10406634127230285No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5000.10202582477676748No Hit

[OK]Adapter Content

Adapter graph