FastQCFastQC Report
Sun 21 May 2023
EGAF00007931542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494330
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44900.9083001233993486No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10080.20391236623308315No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8520.1723545000303441No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7880.1594076831266563No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7270.14706774826532884No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5520.11166629579430745No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5090.10296765318714218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)