FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527421
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18500.35076343186941744No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14610.2770083102493075No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12950.2455344023085922No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12560.23813992996107475No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12200.23131426317875092No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10680.20249478120893935No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9890.1875162346588399No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9460.17936335489106425No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9210.1746233085144505No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8650.16400560463083572No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7560.14333900242879977No Hit
AGACCAGATAGAATCGTTTTCGTCGATCCAACCGTTGCCGTCTT7480.14182218758828335No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6820.12930846515402308No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6250.11850115941534371No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6150.11660514086469821No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6040.11451952045898817No Hit
CTGCGCTTTACGGTCACCCTGCAGGGTGAAATCGGTGGACACGT5630.10674584440134162No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5540.10503942770576068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)