FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531168
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24920.46915476835953973No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16170.3044234592445328No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14430.2716654617748057No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13560.2552864630399422No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13360.25152117597445633No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12880.2424844870172902No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11150.2099147539008374No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10760.20257244412313996No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10750.20238417976986564No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9790.18431080185553345No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9540.17960419302367614No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9360.17621543466473885No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9280.17470931983854449No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8020.1509880113259835No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7700.14496355202120612No Hit
GCCGATGGTAAAGAAGAAGAGATTAGCGTCC7490.14101000060244592No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7120.13404421953129708No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7070.1331028977649256No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6940.1306554611723598No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5940.11182902584493042No Hit
CTGGCACAGTACGATGAAGACGGCAACGGCT5760.10844026748599313No Hit

[OK]Adapter Content

Adapter graph