FastQCFastQC Report
Wed 31 May 2023
EGAF00007931548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470239
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41880.8906109446472963No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10950.23286031145864122No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6870.14609592143569547No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6110.129933927215735No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6000.12759469121021438No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5780.12291621919917317No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5660.1203643253749689No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5600.11908837846286675No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5350.11377193299577448No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4980.10590359370447792No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)