FastQCFastQC Report
Wed 31 May 2023
EGAF00007931549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497477
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8940.17970680051540072No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7870.1581982684626626No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6970.1401069798201726No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6180.12422684867843137No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5790.11638729026668569No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5450.10955280344618946No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5270.10593454571769148No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5170.10392440253519258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)