FastQCFastQC Report
Wed 31 May 2023
EGAF00007931551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475117
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8680.18269184221991636No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7700.16206534390476451No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6050.1273370559251721No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6000.12628468356215417No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5800.12207519411008236No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5780.12165424516487518No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5220.10986767469907412No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5090.10713150655522745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)